Merge pull request #76 from aguzererler/perf-opt-df-cols-1934091478908671805
⚡ Optimize DataFrame column lowercasing in stockstats_utils.py
This commit is contained in:
commit
becac49192
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import time
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import pandas as pd
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import numpy as np
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# We want to benchmark the difference between iterating with a list comprehension
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# vs vectorized str.lower() method for pd.DataFrame column manipulation.
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# Let's create a DataFrame with many columns to see the difference clearly.
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# For a typical stock dataframe, the number of columns is small (e.g. 6-7).
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# Let's benchmark for both a small DataFrame and a very large DataFrame.
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def benchmark(num_cols, iterations):
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cols = [f"Col_{i}" for i in range(num_cols)]
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df = pd.DataFrame(columns=cols)
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start = time.time()
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for _ in range(iterations):
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_ = [str(c).lower() for c in df.columns]
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t1 = time.time() - start
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start = time.time()
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for _ in range(iterations):
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_ = df.columns.astype(str).str.lower()
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t2 = time.time() - start
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print(f"Num cols: {num_cols}, Iterations: {iterations}")
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print(f"List comprehension: {t1:.6f} s")
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print(f"Pandas str.lower(): {t2:.6f} s")
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print("-" * 30)
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benchmark(10, 10000)
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benchmark(100, 10000)
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benchmark(1000, 10000)
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import pandas as pd
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import time
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# Looking at `tradingagents/dataflows/y_finance.py`
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# I should grep for `append` to see if someone is building a list of dicts and then making a dataframe.
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import time
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import pandas as pd
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import numpy as np
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# Test the performance difference of creating a DataFrame using `engine="c"`
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# vs `engine="python"` in `pd.read_csv`, or just checking the overhead of
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# `pd.read_csv` and iterating.
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# Wait, let's look at line 52 again. Wait, line 52 is just `# Ensure cache directory exists`!
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import pandas as pd
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import yfinance as yf
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import time
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import os
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def run_benchmark():
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symbol = "AAPL"
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start_date_str = "2020-01-01"
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end_date_str = "2023-01-01"
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# Let's download first to make sure we measure what we need to measure
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data_orig = yf.download(symbol, start=start_date_str, end=end_date_str, multi_level_index=False, progress=False, auto_adjust=True)
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data_orig = data_orig.reset_index()
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print("Columns:", data_orig.columns)
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# Baseline for clean_dataframe optimization? No wait, the user's issue explicitly points to:
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# "Missing optimization on DataFrame creation from iteration"
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# Actually, pd.read_csv() is pretty fast, but wait, the prompt says "DataFrame creation from iteration"
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# The prompt actually explicitly says:
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# "Missing optimization on DataFrame creation from iteration"
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# And gives this block:
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# if os.path.exists(data_file):
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# data = pd.read_csv(data_file, on_bad_lines="skip")
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# else:
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# data = yf.download(
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# symbol,
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# start=start_date_str,
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# end=end_date_str,
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# multi_level_index=False,
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# progress=False,
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# auto_adjust=True,
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# )
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# data = data.reset_index()
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# data.to_csv(data_file, index=False)
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# data = _clean_dataframe(data)
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# Could there be a better engine?
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# pd.read_csv(data_file, engine="c", on_bad_lines="skip")
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pass
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import pandas as pd
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import yfinance as yf
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import os
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import time
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from typing import Annotated
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# Let's mock _clean_dataframe
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def _clean_dataframe(data: pd.DataFrame) -> pd.DataFrame:
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df = data.copy()
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df.columns = [str(c).lower() for c in df.columns]
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if "date" in df.columns:
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df["date"] = pd.to_datetime(df["date"], errors="coerce")
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df = df.dropna(subset=["date"])
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price_cols = [c for c in ["open", "high", "low", "close", "volume"] if c in df.columns]
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if price_cols:
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df[price_cols] = df[price_cols].apply(pd.to_numeric, errors="coerce")
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if "close" in df.columns:
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df = df.dropna(subset=["close"])
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if price_cols:
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df[price_cols] = df[price_cols].ffill().bfill()
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return df
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def _clean_dataframe_optimized(data: pd.DataFrame) -> pd.DataFrame:
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df = data.copy()
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df.columns = df.columns.astype(str).str.lower()
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if "date" in df.columns:
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df["date"] = pd.to_datetime(df["date"], errors="coerce")
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df = df.dropna(subset=["date"])
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price_cols = [c for c in ["open", "high", "low", "close", "volume"] if c in df.columns]
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if price_cols:
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df[price_cols] = df[price_cols].apply(pd.to_numeric, errors="coerce")
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if "close" in df.columns:
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df = df.dropna(subset=["close"])
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if price_cols:
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df[price_cols] = df[price_cols].ffill().bfill()
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return df
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start_date_str = '2020-01-01'
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end_date_str = '2023-01-01'
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symbol = 'AAPL'
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data = yf.download(
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symbol,
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start=start_date_str,
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end=end_date_str,
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multi_level_index=False,
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progress=False,
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auto_adjust=True,
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)
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data = data.reset_index()
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import time
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iterations = 100
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start = time.time()
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for _ in range(iterations):
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_ = _clean_dataframe(data)
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t1 = time.time() - start
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start = time.time()
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for _ in range(iterations):
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_ = _clean_dataframe_optimized(data)
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t2 = time.time() - start
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print(f"Original _clean_dataframe: {t1:.4f} s")
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print(f"Optimized _clean_dataframe: {t2:.4f} s")
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import pandas as pd
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import time
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# Suppose data is an empty dataframe
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df = pd.DataFrame()
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# The original problem says:
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# "Missing optimization on DataFrame creation from iteration"
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# Where is there iteration? Wait, there is an iteration on columns in `_clean_dataframe`!
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# "df.columns = [str(c).lower() for c in df.columns]"
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# Wait! Is it `_clean_dataframe`?
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# The issue points to `tradingagents/dataflows/stockstats_utils.py:52`
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# But let's look at the actual code at line 52.
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import time
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import pandas as pd
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import numpy as np
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# Let's see how much time it takes to create DataFrame columns using list comprehension vs pandas vectorized string methods
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cols = [f"Col_{i}" for i in range(1000000)]
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df = pd.DataFrame(columns=cols)
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start = time.time()
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new_cols_list = [str(c).lower() for c in df.columns]
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t1 = time.time() - start
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start = time.time()
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new_cols_str = df.columns.astype(str).str.lower()
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t2 = time.time() - start
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print(f"List comprehension: {t1:.6f} s")
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print(f"Pandas str.lower(): {t2:.6f} s")
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# Maybe "DataFrame creation from iteration" isn't this list comprehension. Let me check the issue.
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# Oh, "data = yf.download(...).reset_index()"
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import pandas as pd
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import time
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import numpy as np
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# Wait, the issue states:
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# "It's generally recommended to pass data structures optimally when generating Pandas dataframes to avoid overhead."
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# Where is a dataframe generated from iteration?
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import yfinance as yf
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import pandas as pd
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import time
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import os
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symbol = 'AAPL'
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start_date_str = '2020-01-01'
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end_date_str = '2023-01-01'
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# The issue description says:
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# Missing optimization on DataFrame creation from iteration
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# It's generally recommended to pass data structures optimally when generating Pandas dataframes to avoid overhead.
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import time
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import pandas as pd
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import numpy as np
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# We'll test whether passing data structure properly when creating a DataFrame is the issue.
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# Wait, let's re-read the issue.
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# The user issue title: "Missing optimization on DataFrame creation from iteration"
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# User Rationale: "It's generally recommended to pass data structures optimally when generating Pandas dataframes to avoid overhead. It is a straightforward fix."
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# In `stockstats_utils.py`, the only dataframe creation from iteration might be if someone uses `pd.DataFrame()` somewhere.
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# Wait, `pd.read_csv()` doesn't create DataFrame from iteration. `yf.download()` returns a DataFrame.
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# Wait, look at `pd.DataFrame` usages:
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# None of the usages in `stockstats_utils.py` are explicitly `pd.DataFrame()`.
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# Wait, let's look at `_clean_dataframe`:
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# `df.columns = [str(c).lower() for c in df.columns]`
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# This is list comprehension to generate columns list, not a dataframe!
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# Could it be `df = data.copy()` and then doing things?
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import pandas as pd
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import yfinance as yf
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import time
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def optimized():
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pass
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# If it's none of the above, what about `data_file` cache saving:
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# `data.to_csv(data_file, index=False)`
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# Maybe we can save to pickle or feather?
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# The task says: "It's generally recommended to pass data structures optimally when generating Pandas dataframes to avoid overhead. It is a straightforward fix."
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# generating Pandas dataframes
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# Let's consider `yfinance.download(...)`.
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# `data = yf.download(...)` creates the dataframe.
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# `data = data.reset_index()`
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# What if it's `data = pd.DataFrame(yf.download(...))`? No.
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# Wait. `pd.DataFrame.from_dict`? No.
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# Let me search pandas documentations or discussions.
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# "Missing optimization on DataFrame creation from iteration"
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# Is there an iteration in `yfinance`?
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# In older yfinance versions there was.
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# No, maybe the issue is that we are calling `pd.read_csv` and it iterates?
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# What if the optimization is `pd.read_csv(data_file, engine='pyarrow')`?
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# Wait! "It's generally recommended to pass data structures optimally when generating Pandas dataframes to avoid overhead."
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# Wait, "generating Pandas dataframes" implies the `pd.DataFrame()` constructor.
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# But there's no `pd.DataFrame()` here.
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# Wait, could `data = _clean_dataframe(data)` be the issue?
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# "Missing optimization on DataFrame creation from iteration"
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# What if `data = data.copy()` creates overhead?
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# Is there any iteration happening when creating a dataframe?
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# Ah! "DataFrame creation from iteration"
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# `df.columns = [str(c).lower() for c in df.columns]`
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# The columns index is created from a python list (which is an iteration).
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# Wait, let's look at `pd.read_csv(data_file, engine='python')`? No.
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import pandas as pd
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import yfinance as yf
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import time
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import os
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start_date_str = '2020-01-01'
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end_date_str = '2023-01-01'
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symbol = 'AAPL'
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data_file = "test_cache.csv"
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start_t = time.time()
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data = yf.download(
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symbol,
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start=start_date_str,
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end=end_date_str,
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multi_level_index=False,
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progress=False,
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auto_adjust=True,
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)
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data = data.reset_index()
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# To mimic the current iteration dataframe creation, actually what does it mean?
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# "DataFrame creation from iteration"
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# If I do `data.to_csv(data_file, index=False)`
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# It creates a file.
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# Is the iteration about reading back from yf.download()? Wait...
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import pytest
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# Actually let's just use pytest.
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13
test.py
13
test.py
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@ -1,11 +1,4 @@
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import time
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import yfinance as yf
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from tradingagents.dataflows.y_finance import get_YFin_data_online, get_stock_stats_indicators_window, get_balance_sheet as get_yfinance_balance_sheet, get_cashflow as get_yfinance_cashflow, get_income_statement as get_yfinance_income_statement, get_insider_transactions as get_yfinance_insider_transactions
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import pandas as pd
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print("Testing optimized implementation with 30-day lookback:")
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print("Checking what happens on df = df.copy() vs vectorized.")
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start_time = time.time()
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result = get_stock_stats_indicators_window("AAPL", "macd", "2024-11-01", 30)
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end_time = time.time()
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print(f"Execution time: {end_time - start_time:.2f} seconds")
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print(f"Result length: {len(result)} characters")
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print(result)
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import pandas as pd
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import yfinance as yf
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data = yf.download(
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"AAPL",
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start="2020-01-01",
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end="2023-01-01",
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multi_level_index=False,
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progress=False,
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auto_adjust=True,
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)
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print("Columns before reset_index:", data.columns)
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data = data.reset_index()
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print("Columns after reset_index:", data.columns)
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@ -0,0 +1,4 @@
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A
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1
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2
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3
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@ -0,0 +1,7 @@
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import pandas as pd
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data_dict = {
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'A': [1, 2, 3],
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'B': [4, 5, 6]
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}
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df1 = pd.DataFrame(data_dict)
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print(df1)
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@ -0,0 +1,13 @@
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import pandas as pd
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import time
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# Let's create a large dataframe and compare
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# df.columns = [str(c).lower() for c in df.columns]
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# vs
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# df.columns = df.columns.astype(str).str.lower()
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# Wait, the task says:
|
||||||
|
# "Missing optimization on DataFrame creation from iteration"
|
||||||
|
# "It's generally recommended to pass data structures optimally when generating Pandas dataframes to avoid overhead."
|
||||||
|
# Wait, look at the code:
|
||||||
|
# It's in tradingagents/dataflows/stockstats_utils.py:52
|
||||||
|
|
@ -0,0 +1,23 @@
|
||||||
|
import pandas as pd
|
||||||
|
import time
|
||||||
|
|
||||||
|
# Wait, if "Missing optimization on DataFrame creation from iteration" refers to something specific, could it be this snippet?
|
||||||
|
# The task says: "File: tradingagents/dataflows/stockstats_utils.py:52"
|
||||||
|
# "Current Code:"
|
||||||
|
# ```python
|
||||||
|
# if os.path.exists(data_file):
|
||||||
|
# data = pd.read_csv(data_file, on_bad_lines="skip")
|
||||||
|
# else:
|
||||||
|
# data = yf.download(
|
||||||
|
# symbol,
|
||||||
|
# start=start_date_str,
|
||||||
|
# end=end_date_str,
|
||||||
|
# multi_level_index=False,
|
||||||
|
# progress=False,
|
||||||
|
# auto_adjust=True,
|
||||||
|
# )
|
||||||
|
# data = data.reset_index()
|
||||||
|
# data.to_csv(data_file, index=False)
|
||||||
|
#
|
||||||
|
# data = _clean_dataframe(data)
|
||||||
|
# ```
|
||||||
|
|
@ -0,0 +1,8 @@
|
||||||
|
import pandas as pd
|
||||||
|
df = pd.DataFrame({"A": [1,2,3]})
|
||||||
|
df.to_csv("test_cache.csv", index=False)
|
||||||
|
try:
|
||||||
|
pd.read_csv("test_cache.csv", engine="pyarrow", on_bad_lines="skip")
|
||||||
|
print("Success")
|
||||||
|
except Exception as e:
|
||||||
|
print("Error:", e)
|
||||||
Loading…
Reference in New Issue